PoplarV1, Main, Exploration, bibRecord, 002495

Selaginella moellendorffii has a reduced and highly conserved expansin superfamily with genes more closely related to angiosperms than to bryophytes.

Identifieur interne : 002495 ( Main/Exploration ); précédent : 002494; suivant : 002496

Selaginella moellendorffii has a reduced and highly conserved expansin superfamily with genes more closely related to angiosperms than to bryophytes.

Auteurs : Robert E. Carey [États-Unis] ; Nathan K. Hepler ; Daniel J. Cosgrove

Source :

BMC plant biology [ 1471-2229 ] ; 2013.

RBID : pubmed:23286898

Descripteurs français

English descriptors

KwdEn :
- Bryophyta (genetics), Bryophyta (metabolism), Evolution, Molecular (MeSH), Magnoliopsida (classification), Magnoliopsida (genetics), Magnoliopsida (metabolism), Molecular Sequence Data (MeSH), Multigene Family (MeSH), Phylogeny (MeSH), Plant Proteins (genetics), Plant Proteins (metabolism), Selaginellaceae (classification), Selaginellaceae (genetics), Selaginellaceae (metabolism).
MESH :
- chemical , genetics : Plant Proteins.
- classification : Magnoliopsida, Selaginellaceae.
- genetics : Bryophyta, Magnoliopsida, Selaginellaceae.
- metabolism : Bryophyta, Magnoliopsida, Plant Proteins, Selaginellaceae.
- Evolution, Molecular, Molecular Sequence Data, Multigene Family, Phylogeny.

Abstract

BACKGROUND

Expansins are plant cell wall loosening proteins encoded by a large superfamily of genes, consisting of four families named EXPA, EXPB, EXLA, and EXLB. The evolution of the expansin superfamily is well understood in angiosperms, thanks to synteny-based evolutionary studies of the gene superfamily in Arabidopsis, rice, and Populus. Analysis of the expansin superfamily in the moss Physcomitrella patens revealed a superfamily without EXLA or EXLB genes that has evolved considerably and independently of angiosperm expansins. The sequencing of the Selaginella moellendorffii genome has allowed us to extend these analyses into an early diverging vascular plant.

RESULTS

The expansin superfamily in Selaginella moellendorffii has now been assembled from genomic scaffolds. A smaller (and less diverse) superfamily is revealed, consistent with studies of other gene families in Selaginella. Selaginella has an expansin superfamily, which, like Physcomitrella, lacks EXLA or EXLB genes, but does contain two EXPA genes that are related to a particular Arabidopsis-rice clade involved in root hair development.

CONCLUSIONS

From sequence-based phylogenetic analysis, most Selaginella expansins lie outside the Arabidopsis-rice clades, leading us to estimate the minimum number of expansins present in the last common ancestor of Selaginella and angiosperms at 2 EXPA genes and 1 EXPB gene. These results confirm Selaginella as an important intermediary between bryophytes and angiosperms.

DOI: 10.1186/1471-2229-13-4
PubMed: 23286898
PubMed Central: PMC3680112

Affiliations:

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Le document en format XML

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<term>Selaginellaceae (genetics)</term>
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<term>Magnoliopsida (métabolisme)</term>
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<term>Protéines végétales (métabolisme)</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Expansins are plant cell wall loosening proteins encoded by a large superfamily of genes, consisting of four families named EXPA, EXPB, EXLA, and EXLB. The evolution of the expansin superfamily is well understood in angiosperms, thanks to synteny-based evolutionary studies of the gene superfamily in Arabidopsis, rice, and Populus. Analysis of the expansin superfamily in the moss Physcomitrella patens revealed a superfamily without EXLA or EXLB genes that has evolved considerably and independently of angiosperm expansins. The sequencing of the Selaginella moellendorffii genome has allowed us to extend these analyses into an early diverging vascular plant.</p>
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<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>The expansin superfamily in Selaginella moellendorffii has now been assembled from genomic scaffolds. A smaller (and less diverse) superfamily is revealed, consistent with studies of other gene families in Selaginella. Selaginella has an expansin superfamily, which, like Physcomitrella, lacks EXLA or EXLB genes, but does contain two EXPA genes that are related to a particular Arabidopsis-rice clade involved in root hair development.</p>
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<p>From sequence-based phylogenetic analysis, most Selaginella expansins lie outside the Arabidopsis-rice clades, leading us to estimate the minimum number of expansins present in the last common ancestor of Selaginella and angiosperms at 2 EXPA genes and 1 EXPB gene. These results confirm Selaginella as an important intermediary between bryophytes and angiosperms.</p>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Expansins are plant cell wall loosening proteins encoded by a large superfamily of genes, consisting of four families named EXPA, EXPB, EXLA, and EXLB. The evolution of the expansin superfamily is well understood in angiosperms, thanks to synteny-based evolutionary studies of the gene superfamily in Arabidopsis, rice, and Populus. Analysis of the expansin superfamily in the moss Physcomitrella patens revealed a superfamily without EXLA or EXLB genes that has evolved considerably and independently of angiosperm expansins. The sequencing of the Selaginella moellendorffii genome has allowed us to extend these analyses into an early diverging vascular plant.</AbstractText>
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{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:23286898
   |texte=   Selaginella moellendorffii has a reduced and highly conserved expansin superfamily with genes more closely related to angiosperms than to bryophytes.
}}

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Selaginella moellendorffii has a reduced and highly conserved expansin superfamily with genes more closely related to angiosperms than to bryophytes.

Selaginella moellendorffii has a reduced and highly conserved expansin superfamily with genes more closely related to angiosperms than to bryophytes.

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